IUBio GIL .. BIOSCI/Bionet News .. Biosequences .. Software .. FTP

Match_table tag.

Richard Durbin rd at sanger.ac.uk
Tue Jul 23 05:04:46 EST 2002


MatchTable is an array class, which is defined in some whooks/ file and does in
fact work.  I think there is a matchtable.c or something like that somewhere.
Its use is deprecated, but I think that the St Louis human annotation pipeline
use it, at least they did once.  Ian Korf, now at Sanger, would probably know.
The aim was to efficiently store very large numbers of matches.  We now put these
into SMAPPed subobjects using the old tag structures, which are more flexible in
that they allow, for example, Align information.

Perhaps we should remove all this, but in that case we should remove the code
as well.

Richard

Ed Griffiths wrote:
> 
> Dear all,
> 
> Currently in the wspec/models.wrm held in the acedb CVS repository, in each of
> the Sequence, Protein and Motif classes there is the following line:
> 
>         Match_table UNIQUE ?MatchTable
> 
> There is no actual definition of the class MatchTable.
> 
> I would like to remove the code that deals with this since it appears to be
> redundant.
> 
> Is this in fact true ?  Does anyone still make use of this tag ?
> 
> cheers Ed
> --
>  ------------------------------------------------------------------------
> | Ed Griffiths, Acedb development, Informatics Group,                    |
> |        Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus,  |
> |               Hinxton, Cambridge CB10 1SA, UK                          |
> |                                                                        |
> | email: edgrif at sanger.ac.uk  Tel: +44-1223-494780  Fax: +44-1223-494919 |
>  ------------------------------------------------------------------------

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Richard Durbin                    The Wellcome Trust Sanger Institute
email: rd at sanger.ac.uk                   Wellcome Trust Genome Campus
http://www.sanger.ac.uk/Users/rd/                             Hinxton
phone: 01223 494978                                Cambridge CB10 1SA
fax: 01223 494919                                                  UK
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