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Program to calculate Hamming distances

oconnor at GEODE.BIOTECH.CDC.GOV oconnor at GEODE.BIOTECH.CDC.GOV
Wed Apr 14 13:00:11 EST 1993


Hello:

I am trying to obtain a program (for DOS or Windows) that can generate a 
matrix of Hamming distances (i.e. nucleotide differences and insertions-
deletions are equally weighted) from a multiple sequence alignment.  Can
anyone suggest some freeware which will do this?  Thanks.

Steve

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Steve O'Connor                      National Center for Infectious Diseases, CDC
Pertussis Laboratory                Mail Stop D-11
Phone:  404-639-2822   Fax:  -3296  Atlanta, GA   USA
OCONNOR at GEODE.BIOTECH.CDC.GOV
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