Dr. Ann Barber's SEA (SequenceEditingAligner) is a:
MULTIPLE SEQUENCE ALIGNMENT FOR COMPARATIVE STRUCTURAL ANALYSIS
SEA runs on a Silicon Graphics workstation and is available via
ftp anonymous to ncifcrf.gov.
I have not had a chance to look at this as of yet. I know that
it does work for DNA. But it may also be helpful for ideas in
writing another program also.
Cray Research, Inc.
Eagan, MN 55121
Internet: mwd at cray.com
|Mark Dalton | AUG-GCU-AGA-AAG H |
|Cray Research, Inc. | M A R K | |
|Eagan, MN 55121 | CH3-S-CH2-CH2-C-COOH |