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statistical geometry in comparative sequence analysis

Alan S. Perelson stadler at SantaFe.edu
Sat Dec 11 16:58:44 EST 1993


Katja Nieselt-Struwe in Manfred Eigen's Lab in Goettingen has a 
piece of software that is available from her upon request
[ KNIESEL at DGOGWDG1.BITNET ].
An experimental version of a statistical geometry program is 
also included in the "Vienna RNA Package"
This programm package contains various programms for folding and 
comparing RNA secondary structures,  as well as some tools for 
the analysis of sequence and structure data, including 
statistical geometry and Dress's split decomposition technique.

The "Vienna RNA Package" is available via anonymous ftp from
ftp.itc.univie.ac.at. It is known to run on SUN, HP, Silicon 
Graphics and IBM Risc systems. It is written for UNIX systems
should work however wherever an ANSI-C compiler is available.

Best regards
P F Stadler 
Uni Wien, Inst. f. Theoretische Chemie & Santa Fe Institut, New Mexico






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