I want to see a free package available for researchers to do
exactly what you asked for. Basically the human genome project is supplying
a lot of sequence (along with other projects) and the information is not
really being looked at, even that which can be automated.
These are my thoughts:
This is the basic automated structure. It can be turned "on" or "off"
at any point. It would be ideal to have both a text interface and
GUI interface. I would like to see the Graphic displays in X or motif.
Also have output to postscript (black-white and color) printers or an
option as ascii.
/RNA structure / Including known motifs
/ comparison /
/RNA structure /Motif search / prediction
/ / /
DNA sequence ------protein ----- structure --- structural similarity search
\Databank search \Databank search
\Multiple \Multiple alignment
Cray Research, Inc.
Eagan, MN 55121
Internet: mwd at cray.com