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Seqn alignment

Don Gilbert gilbertd at sunflower.bio.indiana.edu
Fri Mar 18 07:43:03 EST 1994

You may want to look at seqapp at ftp.bio.indiana.edu:/molbio/seqapp.

In article <199403171627.AA24423 at wugate.wustl.edu> brett at BORCIM.WUSTL.EDU writes:
>     1 Mac or VMS based
		seqapp is a mac app
>     2 handle large numbers of sequences
		I've fed it multi-megabyte files of hundreds of sequences 
		of around 3500bp each w/ no problem.  
>     3 handle internal overlaps properly
		you'll have to decide -- it relies the CAP software of
		Xiaoqiu Huang for automatic contig alignments, or clustalV
		by Des Higgins for multisequence alignments, plus you can 
		do hand alignments fairly easily.
>     4 generate a consensus
		of a simple sort
>     5 oh yeah, must be cheap too!

in 6 months or so, I hope to have the cross-platform version
up to speed for these things also.
-- d.gilbert--biocomputing--indiana u--bloomington--gilbertd at bio.indiana.edu

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