LEDIZET at MSVAX.MSSM.EDU wrote:
> Dear netters
> I would like to compile a consensus of intron splice site sequences
> from many GenBank sequences.
> Does anybody know of software that would read the splice site location
> from the sequence header and "extract" the surrounding DNA sequence?
you may want to start from two refs:
A survey on intron and exon lenght. JD Hawkins (1988) NAR 16(21) 9893-9908
A reappraisal of non-consensus mRNA splice sites. IJ Jackson (1991)
NAR 19(14) 3795-3798
I hope these help.
Benoit_Hebert at iaf.uquebec.ca
Virology Research Center
Armand-Frappier Institute, Laval, Quebec