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Consensus pattern searching

bmb5meb at biovax.leeds.ac.uk bmb5meb at biovax.leeds.ac.uk
Mon Sep 12 05:04:16 EST 1994


I am looking for a program that will run on a DEC Vax running VAX/VMS v5.5-2
or a DEC Alpha running OpenVMS AXP v1.5 which will allow me to scan a protein
database with consensus patterns. Preferably the program should allow 
patterns with flexible gaps, etc., and needs to be able to handle a database
which contains ~85,000 sequences. Please post or e-mail any suggestions; any
help will be greatly appreciated.

Mike.

Michael Beck (Leeds University Rifle Coach) :  Juggle 'til you drop
Protein Database Group, University of Leeds :
                                            :  To all masochists, try doing
e-mail : bmb5meb at biovax.leeds.ac.uk         :  the Mills' Mess when drunk.




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