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6 frame translation program

Gene Shpaer gene at apldbio.com
Tue Feb 7 18:27:09 EST 1995


Hi:

I need a program (Unix, source code) which will

1.  Read FASTA-formatted file with nucleotide sequences
2.  Perform 6-frame translation
3.  Output the protein sequences in the FASTA format.

E.g.,

>TEST sequence
aaatttgggccc

   becomes

>TEST+1 sequence
KFGP
>TEST+2 sequence

....
TEST-3 sequence
AQI

Of course, I can convert from-to different formats using readseq, so not only FASTA, but other formats are o'k.

Thank you very much.

Gene Shpaer







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