IUBio GIL .. BIOSCI/Bionet News .. Biosequences .. Software .. FTP

ANNOUNCE: Pratt - finding flexible patterns in unaligned protein sequences

Inge Jonassen inge at lind.ii.uib.no
Thu Mar 23 10:42:26 EST 1995


           A tool for finding conserved patterns in 
                  unaligned protein sequences

       Written by: Inge Jonassen, Dept. of Informatics, 
                 Univeristy of Bergen, Norway

Pratt is a program that allows the user to efficiently search for
patterns conserved in a set of protein sequences. It allows the user
to define the class of patterns to be searched for, and is then
guaranteed to find all conserved patterns in this class. The 
time used by the program depends on the set of sequences, the 
class of patterns defined, and the minimum number of sequences a
pattern is to match.

The program has been implemnted in ANSI C. It has been compiled and
run on different UNIX workstations, DEC alpha, Sun, Silicon Graphics.
The source code and some documentation is available via
anonymous ftp from:

ftp.ebi.ac.uk    under /pub/software/unix
ftp.ii.uib.no    under /pub/bio

"Finding flexible patterns in unaligned protein sequences"
Jonassen, I., Collins, J. F., Higgins, D. G.
Submitted to Protein Science

If you want to be informed about bug fixes, new versions etc.,
send an email to inge at ii.uib.no.

Inge Jonassen, 
Dept. of Informatics,
University of Bergen,

email: inge at ii.uib.no

More information about the Bio-soft mailing list

Send comments to us at archive@iubioarchive.bio.net