Is there anyway to use ClustalW or a similar program to align DNA sequences
taking codon usage and G+C content into consideration? I am trying to align
~30 sequences from a large range of bacteria with different codon usages and
G+C contents, and I already have done the protein alignments.
C. J. Fields
Graduate Student, Dept. of Biological Sciences
The University of North Texas
cjfields @ jove.acs.unt.edu (Remove the spam-blocking spaces before sending)
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