Anthony Ting wrote:
> Is anyone aware of a program that translate a protein sequence
> into a nucleotide sequence given a specific codon usage table?
The SEALS command
can do reverse translations under all known genetic codes. See
The reverse translation uses ambiguity codes, and does not address
the question of likely codon usage.
I'd be happy to add the ability to reverse translate accounting for
user-supplied codon-usage data, perhaps in the form of a separate
tool that could redefine any ambiguous sequence according to a codon-
What is the typical input format for the codon-usage table?