I would suggest you to try 'mFold server' in Washington University for
predicting secondary structure of RNA and DNA, which might be available for
anyone without any limitation. You could get in it from
Takahiko Ishiguro, Ph. D.
Senior Research Manager, Clinical Diagnostics
Tokyo Research Laboratories
(2743-1 Hayakawa, Ayase-shi, Kanagawa 252, JAPAN)
e-mail: isiguro at tosoh.co.jp (office)
isiguro at home.email.ne.jp (home)
"U. Gausmann" wrote in message <354DF347.C6258EA7 at mti-n.uni-jena.de>...
>>does anybody know how to detect secondary structures in RNA?
>I 'd like to know if my specific sequence (mammalian) contains
>termination signals for T7 polymerase.
>I think hairpin structures result in termination of transcription
>- am I right?
>>Thank you for help,
>Ulrike Gausmann | D-07743 Jena
>Institut fuer Anatomie | Germany
>Anatomie II | Tel +49 (0)3641 938553
>Teichgraben 7 | email ugau at mti-n.uni-jena.de>>