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repeat search

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Wed Apr 19 06:38:54 EST 2000


This message has been posted by:  m.mitchell at REMOVE-THIS-TO-SENDicrf.icnet.uk (Mike Mitchell)

In article <38FC815E.8847A9AC at mail.Uni-Mainz.de>, Vladislav Grebenyuk
<grebenyu at mail.Uni-Mainz.de> wrote:

> Hi there,
> I'm looking for repeats in Sponge genome. There are something around 500
> clones already sequenced in this lab. But there is no any software for
> repeat search here.

Are you looking for repeats in the genome or the proteins? If you are looking
for DNA repeats you could try RepeatMasker:

    http://ftp.genome.washington.edu/cgi-bin/RepeatMasker

TTFN

-- 
Michael Mitchell                 "Smoke me a kipper,
User Support                  I'll be back for breakfast."
Molecular Biology Software      Ace Rimmer, Test Pilot
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