I've got short, 9-15 AA long peptide sequences from phage display.
These are "random" sequences which happen to interact with a target.
The next step is to find if something similar exist in nature.
I wonder if you can recommend "the best" program/algoritm for doing
I've used blast (blastp / nr database and tblastn / est db) but
finding anything meaningful in 500+ weak matches is a tall order.
Thank you in advance.
d a r k e d at m y -d e j a . c o m