I have a bunch of sequences I would like to scan for proline content. I have been doing this manually, but this is very time consuming... I would like to count the percentage of amino acids that are proline in the first
15 residues of a protein, then move the window one to the right, and count the percentage again, eventually allowing me to draw a graph from this data.
Is there a software package that can do this? I have access to GCG and EMBOSS in addition to the Internet...
In advance, many thanks,
Institute of Immunology
The National Hospital, Oslo, Norway