Hey all - I have a problem with a fresh build of blast. The build
proceeded without crashing. The search apparently is completed, and then
the seg fault happens just as the results are going to be printed. (the
database is 1.5GB current formatted 'nt'). Does anybody know about this one?
(Sorry if this has been covered; a search of the newsgroup only turned up
the >2GB problem)
System: FreeBSD 4.6
Command: ./blastall -p blastn -d /usr/local/blast/db/nt -i ~/test.fasta
Output:
BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|21666658|gb|AF441258.1| Mesoplodon perrini TMMC-C75
mitochondrial control region, partial sequence
(433 letters)
Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences)
1,357,022 sequences; 6,227,440,795 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
Segmentation fault (core dumped)
----EOF----
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