Markus Fischer wrote:
> Does anybody know about a command line orientated tool for superimposing
> protein structures on Linux? For the superimposition I'd like to use not
> only c-alpha atoms but also any type of atom pairs.
I haven't used it myself, but I hear LSQMAN
by the Uppsala Software Factory (http://alpha2.bmc.uu.se/usf/)
can do this.
Vrije Universiteit Brussel