I am doing research on mutations of a Bacteria. Using BLAST on the web,
I get alignments like
Query: 21 TGCTGT...
|| | |...
Orig.: 321 TGGT-T...
where 98% are identical (600+ positions).
I need a survey, which sample query mutates at what positions. So far I
seem to must check manually: Write down the positions for each query and
so on. Is there no way to do a multiple compare? Or even create the
table of differences automatically?
Thank you for any hint!