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Is there Java implementation of regular expression search of sequence

adelej adelej at uvic.ca
Tue May 6 04:07:00 EST 2003

I am a software developer in a microbiology lab. 
EMBOSS has functions such as DREG, PREG to do the regular expression search of 
a nucleotide sequence. Since most of our own softwares are programmed in JAVA, 
I am trying to find the JAVA implementation of DREG, PREG, and FUZZNUC and 
FUZZPRO so that we can import these ambiguity sequence searching functions 
into our own softwares.

Thanks for any help!


Biochemistry and Microbiology
University of Victoria
BC, Canada

adelej at uvic.ca


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