I am a software developer in a microbiology lab. EMBOSS has functions
such as DREG, PREG to do the regular expression search of a nucleotide sequence.
Since most of our own softwares are programmed in JAVA, I am trying to find
the JAVA implementation of DREG, PREG, and FUZZNUC and FUZZPRO so that we
can import these ambiguity sequence searching functions into our own softwares.
Thanks for any help!
Adele
Biochemistry and Microbiology
University
of Victoria
BC, Canada
Is there Java implementation of sequence searching
Content-Type: text/plain; charset=us-ascii; format=flowed
Content-Transfer-Encoding: 7bit
I am a software developer in a microbiology lab. EMBOSS has functions
such as DREG, PREG to do the regular expression search of a nucleotide
sequence. Since most of our own softwares are programmed in JAVA, I am
trying to find the JAVA implementation of DREG, PREG, and FUZZNUC and
FUZZPRO so that we can import these ambiguity sequence searching
functions into our own softwares.
Thanks for any help!
Adele
Biochemistry and Microbiology
University of Victoria
BC, Canada
adelej at uvic.ca
---
