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Big_blast and Standard blast

Y Sun yudong.sun at ncl.ac.uk
Thu Feb 26 13:53:08 EST 2004


Hi,

Has anybody got the experience in comparing the outputs of big_blast.pl and
standard blast? Running on the same reference and query sequences, I found
that big_blast.pl reports much more alignments than standard blast. Also,
the extra alignments are more than the consequence of cross-boundary
matches. Does anybody know the reason of such a phenomenom?

Thanks.

George


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