> I am running local blast on different databases. This works perfectly.
> The problem comes when I want to retrieve sequences from the large
> (and practically not possible to open) databases.
> Can this be done through the BioEdit program?
> Other programs?
I don't know about BioEdit but fastacmd, which is part of the NCBI
toolkit, can do this.
So can the demo program in my blastdb_api package. You can pick
up the source code for that here:
mathog at caltech.edu