IUBio GIL .. BIOSCI/Bionet News .. Biosequences .. Software .. FTP

General error or specific for my setup?

Peter Rice pmr at sanger.ac.uk
Tue Jan 9 15:42:00 EST 1996

In article <4cu1g5$7bb at rc1.vub.ac.be> palard at dec5 (Philippe Alard) writes:
>   Christoph Gartmann (GARTMANN at IMMUNBIO.MPG.DE) wrote:
>   : we have SRS V4.08 under VAX-VMS, the sequences are in GCG format, the GCG
>   : databases have been created as "novmsonly". Now I do a 
>   :    getz -d "[SWISSPROT-ID:cra2_mesau]"
>   : to view the sequence data. Result: the comment line in the GCG .SEQ-file is
>   : treated as sequence characters and the sequence itself is truncated. 
>   : Question: does this happen on other sites? Under Unix, VMS-VAX, VMS-AXP,
>   : with or without "novmsonly"?
>    Yes we have the same problem under Unix. We also run srs v4.08.

Just to counter these two sites - we run srs 4.08 on Unix (Irix 5.2)
and have no problems like this.

Is this only with "novmsonly" VMS formatting of databases, or is
this also happening to some pure Unix sites?

Peter Rice                           | Informatics Division
E-mail: pmr at sanger.ac.uk             | The Sanger Centre
Tel: (44) 1223 494967                | Hinxton Hall, Hinxton,
Fax: (44) 1223 494919                | Cambs, CB10 1RQ
URL: http://www.sanger.ac.uk/~pmr/   | England

More information about the Bio-srs mailing list

Send comments to us at archive@iubioarchive.bio.net