IUBio GIL .. BIOSCI/Bionet News .. Biosequences .. Software .. FTP

EMBL Indexing

Peter M. Woollard x4523 pwoollar at hgmp.mrc.ac.uk
Mon Jan 29 10:19:10 EST 1996

      I am getting an error building the ID indeces for EMBL, has anyone ideas
on how to convince SRS that there is space?

Unix %  srsbuild -i EMNEW EMBL -xdir 'SRSINX:' -odir 'SRSINX:' -env 'unix'
e__settoosmall, set has not enough space for IDs
attempt to copy 1890 IDs where only for 1000 is space
Segmentation Fault (core dumped)

I have tried the following:

1)  altered the sdl file for embl (and similarly the emnew part),

      embl.sdl:    /format=@EMBL_FORMAT /cachesize=2048 /maxIndexSizeKb=6400

2)  srssection 

3)  srsbuild -i EMNEW EMBL -xdir 'SRSINX:' -odir 'SRSINX:' -env 'unix'

This appeared to have no effect, so I forced an srsmake for all the binaries
and then repeated the above. This also had apparently no effect. There is currently 
sufficient physical disc space.

Any other ideas?
(I checked through any documentation files and WWW refs. I could find,
 but could not see anything of relevance. )


Best Regards,	
             Peter Woollard
Computing Services Section,         Internet: p.woollard at hgmp.mrc.ac.uk
MRC Human Genome Mapping Project    http://www.hgmp.mrc.ac.uk/
Resource Centre, Hinxton Hall,       
Hinxton, Cambridge, CB10 1RQ, UK    Tel: ++44 (0)1223 494 523

More information about the Bio-srs mailing list

Send comments to us at archive@iubioarchive.bio.net