IUBio GIL .. BIOSCI/Bionet News .. Biosequences .. Software .. FTP

srscheck bug

Guy Bottu gbottu at ben.vub.ac.be
Tue Jul 8 09:32:32 EST 1997

In this newslist have already appeared several messages about the
problems that arise when you have two databanks that share the same
$libformat like EMBL and EMBLNEW. Here is another one : srscheck writes
an srsupdate script where the line of the type

srsbuild EMBLNEW ' id acc des gen dat ... ' -xdir 'SRSINX:' -odir
'SRSINX:' -s 'unix'

is missing. This is not a great problem, since usually the only
databanks that share a $libformat are the major release and the updates
of the same databank and you do not need to index them together very

And here is another bug :

for big databanks that must be indexed in chunks, the line of the type

\rm ../index/embl_id_*.i*

is missing. Again, this is not a great problem because you can easily
remove the embl_id_1.ids etc. "by hand" and it does not prevent SRS from

	Guy Bottu

More information about the Bio-srs mailing list

Send comments to us at archive@iubioarchive.bio.net