John Peden wrote:
>> Hi All
>> There appears to be a bug in the embl databases under srs5. I have
> included an example below ... the problem is present on other sites. It
> also appears to be database format (GCG/Native) independent (though the
> error message varies between formats).
>> Example
> Via the web
> select new srs session
> select embl and emblnew
> use these ID's as your query SMU75476|SMD031
> check the boxes for the three sequences
> select save button
> select save complete entry
> select save
>> Errors Messages are:
>> www.sanger.ac.uk native embl format
> says "not possible to write to token table "sequence"
>> worf.molbiol.ox.ac.uk gcg embl format
> says syntax error production `seq' :
> |àØÿÿÿÿÿÿ>>>>SMD031 5/97 2BIT Len: 2195|
> .....................................^
> no match with |^[0-9]+|
>> www.ebi.ac.uk gcg embl format
> says syntax error
> production `seq' :
> | 2195|
> .....................................^
> no match with |^[0-9]+|
>>> From the command line:
>> getz -e '[libs={embl emblnew}-id:SMU75476|SMD031]'
>> Generates an error .... But
>> getz -e '[libs={ emblnew}-id:SMU75476|SMD031]'
> getz -e '[libs={embl }-id:SMU75476|SMD031]'
>> work fine ...
>> john
Well.. on our site (http://www.seqnet.dl.ac.uk/srs5) I don't
get an error, but srs does refuse to retrieve an entry with
the same number from both embl and emnew (called eupdates
at our site)
Martin
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