Hi!
In article <1995Feb13.160849.25030 at comp.bioz.unibas.ch>, Shun'ichi Kuroda <skuroda at inherit.biosig.kobe-u.ac.jp> writes:
|> Dear Sirs:
|>|> I have a novel promoter sequence from human genome, of which
|> length is about 2kbp and has enough transcriptional activity.
|> However, it has been still unclear whether the promoter sequence
|> contains known promoter motifs or not.
|> If the database of the known promoter motifs is available, it will
|> be helpful for us to construct the deletion mutants and understand
|> the essential transcriptional region of the promoter sequence.
|> Therefore, I want to know the services for analyzing the promoter
|> sequence, which are on internet or distributed as commercial
|> softwares.
|> Any comments will be appreciated.
|> Many thanks,
|>|> --
|> SHUN'ICHI KURODA
|> BIOSIGNAL RES CENTER
|> KOBE UNIVERSITY
|> NADA, KOBE, 657 JAPAN
|> E-mail: skuroda at inherit.biosig.kobe-u.ac.jp|> URL:http://inherit.biosig.kobe-u.ac.jp/biosighome.html|> Tel +81-78-803-1255 Fax +81-78-803-0994
You might find something useful in the following URLs, especially in PSORT.
EPD - Eucaryotic Promoter Database at EMBL-Heidelberg
http://www.embl-heidelberg.de/srs/srsc?-id||781260221_129.186.4.14||-info||EPD
PSORT - Predict Protein Sorting Signals Coded in Amino Acid Sequences at GenomeNet, Japan
http://psort.nibb.ac.jp/
Good Luck!
Pedro Coutinho
--------------------------------- H2N-CH-CO-NH-CH-CO-...-NH-CH-COOH --
Pedro M. Coutinho - Graduate Student \ \ \
IOWA STATE UNIVERSITY R1 R2 Rn
Department of Chemical Engineering Phone: 1-515-294-9370
2114 Sweeney Hall Fax: 1-515-294-2689
Ames, IA 50011-2230 E-mail: pedro at iastate.edu
U.S.A. URL: http://www.public.iastate.edu/~pedro/
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--
Pedro M Coutinho
pedro at iastate.edu
