Does anyone know of a server or a standalone program that will allow you to
search a local protein database using peptide mass fingerprinting data?
I've searched fairly extensively but can only find websites that use the
GenBank/SwissProt/EMBL/Owl etc etc databases. What we want to do is create
a local database (eg from a FASTA file of ORFs from a complete genome
sequence) and search that.
thanks for any suggestions,
School of Microbiology & Immunology,
University of New South Wales,
Ph: +61 2 9385 2093
Fx: +61 2 9385 1591
email: neil.saunders at unsw.edu.auhttp://www.crosswinds.net/~nfws/index.htm