Hi Fergus,
You can use the "pattern search" page from our web site at:
http://pir.georgetown.edu/pirwww/search/patmatch.html
Option 2 "Search a query pattern against a sequence database" allows
you to search user-defined patterns or Prosite patterns against PIR
protein sequence database or iProClass database of PIR and Swiss-Prot
sequences.
Cathy H. Wu
Director of Bioinformatics
National Biomedical Research Foundation
Georgetown University Medical Center
3900 Reservoir Road, NW, Washington, DC 20007-2195
PIR Home: http://pir.georgetown.edu/
Fergus Doherty wrote:
>> Hello everybody,
>> I have used Pratt to generate "patterns" present in several proteins. I
> now want to see what other proteins contain these patterns, so I need to
> yhrough them at a protein sequence database. does anyone know of a WWW
> site that will allow me to do this? The "patterns" are Prosite-type
> regular expressions e.g. FIL-x3-[VIL] etc, etc.
>> Thanks
>> --
> Fergus Doherty,
> School of Biomedical Sciences,
> Nottingham University,
>>Fergus.Doherty at nottingham.ac.uk> 0115 970 9366 (74-41366 internal)
