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RAT draft genome annotations fgenesh++

Victor Solovyev victor at softberry.com
Tue Jan 14 06:28:01 EST 2003

==== RAT draft genome annotations fgenesh++

 We're pleased to announce the release of fgenesh++ gene annotation on
 the Nov. 2002 rat assembly produced by the Baylor College of Medicine
 Rat Genome Sequencing Center and the Rat Genome Sequencing Consortium.

You can see/get gene annoation at UCSC Genome Browser on Rat Nov. 2002 Freeze


or alternatively in GenomeExplorer: 

Fgenesh++  annotated:

 43008 genes includes 28955 genes supported by NR proteins, among them 3763
genes correponding RAT refseq mRNA

ID and Name of similar protein added after ## in name line of fasta files 
Refseq corresponding proteins additionally marked NM_..

Fgenesh++ predictions are based on complex fully automatic script that mapped
known Refseq RNA, predict genes and refine predicted genes that have protein 
support from other organisms.

Solovyev V.V. (2001) Statistical approaches in Eukaryotic gene prediction.
 In Handbook of Statistical genetics (eds. Balding D. et al.),
 John Wiley & Sons, Ltd., p. 83-127.)


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