Hi all!
We are trying to use PAP, version 4.0, to do a two locus linkage
analysis. By two locus, I mean there are two underlying loci causing the
disease, and we want to look at one marker at a time and estimate lods
scores and recombination fractions. This is in opposition to a
multi-POINT linkage analysis, when you are hypothesizing one disease
locus, but have multiple markers to use.
Anyway, we've been having trouble getting it to go - we can't even get
the model files to work. If anyone has done this and would be willing to
part with advice and/or an example file, it would be enormously appreciated.
I am nicky at biostat.washington.edu, but it would be best if email replies could
be directed to
katrina at biostat.washington.edu
Thanks lots!!
Nicky
