Sftberry completed fully automatic annotation
of Human genome by FGENESH++ program. Of 38,570
predicted genes, 27,851 (72%) have homologs in NR
protein database. Results are presented for public
in the Genome Browser of UCSC Human Genome Project
Team site
http://genome.ucsc.edu/goldenPath/octTracks.html
Fgenesh++ predictions are based on Softberry's gene
finding software. Fgenesh++ uses both HMMs and
protein similarity to find genes in a completely
automated manner.
Fgenesh++ uses FGENESH and FGENESH+ programs.
Fgenesh is ab initio gene prediction works very fast
processing Human genome sequences for about 4 hours.
The programs also have parameters for many model
organisms such as Drosophila,
Yeast, Dicot and Monocot plants.
Later we plan to annotate also CELL LOCATION of
predicted proteins
(by our ProtComp program available
at:http://www.softberry.com/protein.html)
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Moderated
bionet.genome.gene-structure
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