SSR map updates
Mary Polacco
maryp at teosinte.agron.missouri.edu
Tue Oct 5 12:58:45 EST 1999
Dear Colleagues,
Over 110 new map locations have been assigned since July by the
Missouri Maize Project to SSR's identified at Missouri (MD McMullen;
umc designated) or by the Maize Microsatellite Consortium (KE Edwards;
mmc designated). The list is below.
More details may be found on the SSR page,
http://www.agron.missouri.edu/ssr.html,
at the MaizeDB site.
Best regards,
mary polacco
Colummns:
SSR
Bin (or Bin Range)
GenBank Accession
Primers
forward and reverse
umc1106 1.00 AI714829
CATCCAGTCATCGGTAATACGACA AACTGTTGCCTTCTTTTTCCCTTC
umc1041 1.00- 1.01 G44698
CATTTCTTAGCACAACGCTGGTAAC GCCACTGTGATTTCCCTTGTGT
umc1177 1.00- 1.01 AI001344
CGTGTACCGCTCCTCTATAGTCGT AAGTGGCCGAATTCATCCTTTATT
umc1071 1.01 AI396561
AGGAAGACACGAGAGACACCGTAG GTGGTTGTCGAGTTCGTCGTATT
umc1160 1.01- 1.02 AI586523
CGTTTGATATGATGTGGAGATTCG AAGCTTGTGAATGTTCTGGATGTC
umc1070 1.02 AF039585
GGTCTCTCTATCGTCCGGTGAGTA CCGGAGATGGGAAAGAAGATAAC
umc1166 1.02 AI438624
CGATCAGATCATACACAACCTTGC GAGGATCGATTCTTGGCGAGT
umc1021 1.03 D84409
AGCCTCCTGAGACCTCTCGATT ACTTCGCCACCTTACATTCTTGA
umc1169 1.03- 1.06 AI396370
TAGCCAACAGTCCAACATTTTTCA CAGGCTAGAATAACATCCCGAAGA
umc1035 1.06 G44396
CTGGCATGATCACGCTATGTATG TAACATCAGCAGGTTTGCTCATTC
umc1123 1.06 AI691197
ATTGAATTCGCAACAGAATCGTG CGAGAACAATTACACGTTACACGC
umc1122 1.06- 1.07 AI691437
CACAACTCCATCAGAGGACAGAGA CTGCTACGACATACGCAAGGC
umc1147 1.07 AI491675
GAGAAACCATCGACCCTTCCTAAC TTCCTATGGTACAGTTCTCCCTCG
umc1128 1.07- 1.08 AI677212
TCAATTTTGAGCTATCACTTTCCG ATTGGTTCCATTGGTTTTGTTGAT
umc1184 1.09- 1.11 U13702
CTTCCTTACGTGTCACCGCTCT GTGGAGTGATGTGATCGATGATG
umc1064 1.11 AB001387
GTGGGTTTTGTCTGTAGGGTGGTA TCCATCCACTCGACTTAAGAGTCC
umc1111 1.11 AI714551
GGCAGCTGGTACTGGTAGAGTCC CCTGTACGAGCCAGCTCTGATG
umc1118 1.11 AI691735
ATCAGATTCCGAAGGGTCCATAAT GTAGTGAAATGAATCGTGAGAGCG
umc1129 1.11 AI673868
GGATGACCGATATAAAGACCTCCC GAGGATGCAAAGAACATGTTGGA
umc1165 2.01- 2.02 AI491254
TATCTTCAGACCCAAACATCGTCC GTCGATTGATTTCCCGATGTTAAA
umc1185 2.03- 2.04 U13701
AGTAAAAGAGGCAAGGACTACGGC GCGGCGATATATACGAGGTTGT
umc1024 2.04 G42326
CCTTTTTCGCCTCGCTTTTTAT TCGTCGTCTCCAATCATACGTG
mmc0401 2.05
CTCAGCTGCACTCCACA CCTTCCTTCTTCTCCAGC
umc1004 2.05 G42328
CTGGGCATACAAAGCTCACA TGCATAAACCGTTTCCACAA
umc1065 2.05 U82230
ACAAGGCCATCATGAAGAGCAGTA CACGGTCTGGCACACTAACCTTAT
umc1079 2.05 G44735
AGCACACATGCACAACATCTTACA CGTTGGGCCATGACTTTCTTTA
umc1080 2.05 G44737
GAGGAGAAAAGGAGATGGAAAAGC AGATGCCGCAGAAGATTCTAAACA
umc1108 2.06- 2.09 AI714672
TAAAGAGAGAGGAAACAAGCTGCG ATGATGAAGCCTCACACATACGAA
umc1049 2.07- 2.08 AI391788
GCAGGAAGTTGCAGTTGTTGTTTT GTTTCCCGCTTTGTAAAATCCTGT
mmc0381 2.08- 2.10
GTGGCCCTGTTGATGAG CGACGAGTACCAGGCAT
umc1057 3.01 Y18377
GCCACGCTCAACTACGACAAC GAACCCCTCCACGTAGCTCAG
umc1102 3.04- 3.05 AI714980
AAAATTAAAGTCAAGAGCGGGGAG TCTAGCCGTAGCTTTAGCTGCATT
umc1158 3.04- 3.05 AJ223471
AATGCAACTGCTTCAGCTCCTACT CGACGAATCGAGAAAAGATATTTGA
umc1167 3.04- 3.05 AI461518
CCTGCATGCATTAGGTATACGAAG GTTTCTTCCAAGTTTTTGGCTTGA
umc1174 3.04- 3.05 AI065741
GCTAGTAGCTCTAGTTGTCCGCGA GCTCAAGGTTGTTTTCTGCCAGT
umc1027 3.06 G42325
AACTCTGTCTCCGTCACCGTGT GACCTCATCTCGGTGGAAATTG
umc1135 3.07 AI666158
TTTTTAACCTCACGAGCATCGTCT CGCTAGCTTAGCTCCATCGTTTTA
umc1148 3.07 AI619288
AAAATTACAGAGCATTTTGAAAGAAGAA TAGCCGTGTCAGTTTGTAGATCCT
umc1140 3.08 AI657278
CGAGCAAAGAGAGGGAGAGAGA GCCTCTACCACCTCGTCCATC
umc1136 3.10 AI665966
CTCTCGTCTCATCACCTTTCCCT CTGCATACAGACATCCAACCAAAG
umc1088 4.04 G44744
TCATCCTCCTAGCTCCTCTACTCG AAAACAGTCAGCAGAACCCACTTT
umc1173 4.04 AF035815
ATCCGCCAAAAAGGGGAAAA TAGAAGTAGCACACGCGCCG
mmc0471 4.04- 4.05
TTAGCACATTTGAAGAGTTTTG TTTCCTTCACGTTTCTCTGT
umc1117 4.04- 4.05 AI691779
AATTCTAGTCCTGGGTCGGAACTC CGTGGCCGTGGAGTCTACTACT
umc1175 4.04- 4.05 AI065709
ACACCCCAAAACTCACTTAATCCA CCCTCGTAGTCTGTCAAGGTTTTG
umc1142 4.05 AI649544
CCGAAAACCCATTCTTCTAGCATC GTGCGGTGTTCTCTCTTTCACTCT
mmc0371 4.05- 4.07
CCACGCACCTCTTGTAAC GGGAACCTACAGCTTGGT
mmc0341 4.06- 4.11
CTGACGATTCATGTGGCT TCCTAGTACACCGCAACTCT
umc1043 4.07- 4.08 G44699
CTGCGCATGAGAAAACAGTGG TCCATCTCTGGCTGGAGGTTAAT
umc1058 4.07- 4.08 U58209
AGCAAGCAGTTCGAAACAAGGAT GACACCAGCACCACTTGAACG
umc1051 4.08- 4.09 AI372215
CTGATCTGACTAAGGCCATCAAAC AATGATCGAAATGCCATTATTTGT
umc1132 4.08- 4.09 AI667779
CCAGTCCTCATTACGTTCCGAAT GGAGAGGGACAGAGATAGGGAGAG
umc1101 4.09 AI715011
GCTGAAAAACGGAGTTCATATGGT AAGCTTATCCACCTCGAGGAAAAC
umc1109 4.10 AI714656
GCAACACAGGACCAAATCATCTCT GTTCGGTCCGTAGAAGAACTCTCA
umc1163 5.00- 5.01 AF105716
AACTAGAGGACACGCAGACTTGCT GTTCTGCAGGGAAGAAGCAGC
umc1151 5.02- 5.07 AI612267
GATCCATAGCGCTAGTGCACTCTT ACTGCCGGGTGGCTAATGAT
mmc0351 5.03
GCAGTGCATGTATCTGATCTAC AGGCTCTCTTGATCCTTCA
umc1048 5.03 AI391947
TGCGCTGTTTCCTACTCAGACTAA AAGACAAGTCCAGTGACGAAGAGC
umc1060 5.04 AI065782
ACAGGATTTGAGCTTCTGGACATT GGCCTCTCCTTCATCCTATTCAA
mmc0282 5.05
CTCTTTCTTTATTTGTTCCGTT GGACTACACATCACCAGCA
umc1155 5.05- 5.06 AI600986
TCTTTTATTGTGCCCGTTGAGATT CCTGAGGGTGATTTGTCTGTCTCT
mmc0481 5.06
GCACCTGCGAGACTAGG TGTTTGAGCCGTTCTAGACT
umc1072 5.07- 5.08 AI396502
GAGGAGACCGCCTCTGGTTC CTTCGGGTTCCTGGACCTTCT
umc1153 5.09 AI612208
CAGCATCTATAGCTTGCTTGCATT TGGGTTTTGTTTGTTTGTTTGTTG
umc1143 6.00- 6.01 AI637041
GACACTAGCAATGTTCAAAACCCC CGTGGTGGGATGCTATCCTTT
umc1178 6.01- 6.02 AF019146
CTGTCGTAAGAGCGCCAACAG GTCTGAACGATGAACAGTACACGC
umc1133 6.01- 6.03 AI666201
ATTCGATCTAGGGTTTGGGTTCAG GATGCAGTAGCATGCTGGATGTAG
umc1006 6.03 G42321
AATCGCTTACTTGTAACCCACTTG AGTTTCCGAGCTGCTTTCTCT
umc1083 6.03 G44740
CTTTCCTCTCTGGAGCGTGTATTG ATATGTTGCAGAACCATCCAGGTC
mmc0523 6.04
CCCTCTCTTCACCCCTT AGACCCTGCTGCTAGCTAG
umc1105 6.04 AI714896
ATTCCTGCATCATCATCCACTACA GCCAACTGATCTGCTCTAGCTTC
mmc0241 6.05
TATATCCGTGCATTTACGTTT CATCGCTTGTCTGTCGA
umc1087 6.05 G44743
AATCGTTTACACGAGAAGCAAAGC ATTTCTAACTGGTCGCGCTGTTT
umc1114 6.05 AI692068
CAATGTGTTATTGATTGTACACCGC ACAGCAGGAGGCAGAGACTGAC
umc1187 6.05 L18924
AGAGCTACCACCCCTCTTATCCC ATGTGCATGCTCTTGTTCCTATCA
umc1063 6.07 Z29512
AGGCCACTGAGCAGGTGAAG GTGATGGTAGAGGAGTCCTTGGTG
mmc0411 7.02- 7.03
CGATGCAAGAGTGTCAAGTA ACTCCCTAGTGCAAAAATCA
umc1112 7.03 AI711634
TTGGGTTCAGTTTTCACAACCTTT AAGATGATTACTAACTCGCGGCAG
umc1134 7.03 AI666177
AAAACTAACAGGCAGCAGACCAAC ATCAGCAAGTGACTGAATTCCTCC
umc1103 7.04 AI714939
TGGAGAGAGCTCAACTGGTAGCTT AATTTTCAGGGTGTTACGTGGATG
umc1154 7.05 AI603762
CCACCACAAGACAAGACAAGAATG CCTGATCGATCTCATCGTCGT
umc1075 8.01 AI396125
GAGAGATGACAGACACATCCTTGG ACATTTATGATACCGGGAGTTGGA
umc1139 8.01 AI665279
TTTGTAATATGGCGCTCGAAAACT GAAGACGCCTCCAAGATGGATAC
umc1157 8.02 AI600685
AACTCGCTATCGAAAAACCACAAG TCGGATTTTAGCTGAGCTTGTACC
umc1172 8.04 X59546
CTCCTCCATCCAACACTGAACC ATGAAGCAGAGGCAGTCTTTCTTG
umc1130 8.04- 8.05 AI670662
TTGGGACTCATTACTTCCGGACT GCTAGGGGAAAGCTCGTACTATGG
umc1121 8.05- 8.06 AI691589
AAAACGACATGTCATCGTCTTCAA GGGGTCAGGTACAGGGCTAGTAGT
umc1149 8.05- 8.06 AI619232
TACAGTAGGGATTCTTGCAGCCTC GTGGGACCTTGTTGCTTCCTTT
umc1055 8.07 AF101430
CTCCAACTTGCACTCTCCAGTCTC TTCTGCCAGCTGCAATAATCTTCT
umc1005 8.08- 8.09 G42329
TTTGATCACAGACTTATCCCTGTT CTAATGACGAACCCCTAAAAGGT
umc1069 8.09 M16900
AGAGAATCCCCAAGCAAACAAAC CTTCATCGGAGCCATGGTGT
umc1040 9.01 G44697
CATTCACTCTCTTGCCAACTTGA AGTAAGAGTGGGATATTCTGGGAGTT
umc1033 9.02 G44394
CTTCTTCGTAAAGGCATTTTGTGC GTGCGGGATTCCTTAGTTTGC
umc1037 9.02 G44398
GTGCGCGATTCCTTAGTTTGC CTTCTTCGTAAAGGCATTTTGTGC
umc1078 9.02 G44734
AGGCACTAGCAGGCGAGAGG GCGTAGTAACATCCATCCAACCAA
umc1131 9.02 AI668245
CCTACAAATCAACCATCGATTTCC GTGCCATCAAAGAGGAATTGGTAG
umc1170 9.02 AI649893
TGGGTGCTAAAACGTAACAACAAA GAGGACGAAGCAGAAATCCTACC
mmc0051 9.03- 9.04
ACGACTCTATCCCTGCCAACT TCTGGTTGTGAAAGCTATCCT
umc1137 9.06- 9.07 AI665873
ATCAGTCACTCTTCTGCCTCCACT GGCTGGATAATGTTGTAGCTGGTC
umc1104 9.07- 9.08 AI714928
CAACAATTCCAATCATGGCACTAA GTAACTCTGGTGAACTCAGAGGGC
umc1045 10.00
GCTCGTCCATGAGCAGCATC AAGCTGAAGATGCGGAGGTTG
umc1152 10.01 AI612250
CCGAAGATAACCAAACAATAATAGTAGG ACTGTACGCCTCCCCTTCTC
mmc0501 10.02
TGCTGAACACTCTAAGCAATAC ATTACTCTACTCGCTGCCTG
umc1179 10.03- 4.11 T23346
AGCTCCCCATCTTAATCCGTAAA ATTGAGCTCGGCGTAGAAAAA
umc1009 10.03-10.04 AF048900
AGCAGCTCTGGTGATGGAAGAA ATCCTAACAGGCGCATACCAGA
umc1047 10.03-10.04
AGGAAAGAAGGTAACCCATGCACT GGCGAGTTAGAGGAGTCAGACACA
umc1053 10.03-10.04 AF043346
CTTGTATCATCAGCTAGGGCATGT TCAACTTATGTCAACTGCATGCTT
umc1077 10.03-10.04 G44733
CAGCCACAGTGAGGCACATC CAGAGACTCTCCATTATCCCTCCA
umc1097 10.05 G48148
CTCGTCAACGTCAACCCAAGTAAG CTGTTAGATGTGCGACAACAGAGC
umc1061 10.06 AF057183
AGCAGGAGTACCCATGAAAGTCC TATCACAGCACGAAGCGATAGATG
umc1176 10.06-10.07 AI065566
ATGAGTTCATGACAGAGCGCTACC GAGTTTGTTCGTTTGTGTGTGGAG
umc1084 10.07 G44736
GATAAAAAGGCAAGTGCAACAAGG ATATCAACCAGAGGCTGGAACTTG
*** END OF QUERY RESULTS ***
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