SSR release
Mary Polacco
maryp at teosinte.agron.missouri.edu
Fri Jul 14 18:10:41 EST 2000
SSR release notes:
The Missouri Maize Project has released 47 new SSR markers,
and updated bin locations
of 55 others less precisely mapped in earlier releases.
They have been incorporated
into the MaizeDB and are accessible from the SSR page:
http://www.agron.missouri/ssr.html
Two tables below have just the new OR the updated data.
GenBank entries are being prepared for the
new SSR markers where no accession is listed below.
Where screening images are absent these
are being prepared for linking to the SSR page.
Have a great weekend,
-mary polacco
curator MaizeDB
NEW SRR MARKERS
SSR Bins GenBank PrimerF
PrimerR
---------- -------------------- --------------------
------------------------------ ------------------------------
umc1676 1.03- 1.06
AGTCGTACGATGACGGAGGC GCACCACCGACTGATCAAGA
umc1664 1.06
AATTGTTTACTGCGCTGAAACTCC CCTCTTTGCCTGTACCGTGTATTC
umc1668 1.06- 1.07
AGCAAATAAAAGTAGAGCGGCGAG ACCACCACCACTGCCTCCTC
umc1661 1.06- 1.09
ACGAGACTCCCTCCTCTCCTCTC GGAGTAAACTGTTGAAAGGCCCAT
umc1681 1.11
GAGGACACTCGCAAAGTCGC GCCTTTGTGGGGTCAGGAGTAG
umc1630 1.11- 1.12
CAGACCTTCGAGGGCAAGAACT AGTTTTGGCTTCTTCTCCCAAGTC
umc1635 2.05- 2.06
GCTGAGCAGATCTTTCCTTGTTTC AAGGAGCAGAACTCGGAGACG
umc1658 2.06- 2.07
AGAGATGGGGTAGAAATAGACGGC CTCTCTGCTTTCTCTTCTCTTGCG
umc1633 2.08
GTCCTTCCTCTCCTTCGTGCATA CAGAGGCTGTTGTTCCCCAC
umc1637 2.08- 2.09
GTTCCAGTTCAGCTTCCAGCA CTGTCGTGTACAGCATCACTTCTG
umc1674 3.06- 3.07
ACGAGGTCCACGACTATGGATCTT AGTAGTACACGGCTGACGGCAC
umc1644 3.06- 3.08
CCATAAACTGTTCCTTTGGCACAC CTTTCACGTGTTAAGGGAGACACC
umc1659 3.07- 3.08
CAAGCTTGCTACTGTGATTTCTCG AACTTCTCGGTGATCTTGTCCATC
umc1641 3.09- 3.10
CTCCCTTCGTCTCCCGACTC CAGATCGGCTCAGCCACAAC
umc1639 3.10
CTAGCCAGCCCCCATTCTTC GCAAGGAGTAGGGAGGACGTG
umc1669 4.01- 4.02
ACGAGGGCTTCTTCTCTGAGC GTTTCCTTCTTCATGCGACGAC
umc1652 4.04- 4.05
GAGAGCAGTAGCACTGACCCTTTC CACTCGACCTCGATCGGAAC
umc1662 4.05- 4.06
CCTTCTTCCTTCACGCCTCTTT GACCACCTCATCTCTGACTCTGG
umc1476 4.07- 4.08 AI770848
CTCTGCCTCAGTCTGGTCGC CGAGGAAAGGAAGGAGAGCG
umc1651 4.07- 4.08
GATGGTGGTTATGAATGCATGTGT AGACGACGAAATTAACCAGCCATA
umc1667 4.07- 4.08
AAACATACCCCACCACTGCAAG CGAAGAACATGTAACACAGCAACC
umc1650 4.08- 4.10
TCGTGAACTACTACATGGTGAGCA AAAGTTCGTTCCTCCATGGTACTG
umc1631 4.09- 4.10
CATGAATAAAGATGGATGCTGGTG GGAAAAACAAAGAAGCATAGTAGACAGC
umc1643 4.09- 4.10
ATCACCACATCCGTTGCAAAT CTAGAATCTCGTAGAGGCTCCTGC
umc1557 5.03 AW066607
CTAGTTCTCTCAAAAGCGCCG ACAATAGGTAGGTCCCCTGCTTT
umc1629 5.03- 5.05
GCTCCAAGTtcgtcgtcgtc CTCACGACCTTCTTCTTGCACAC
umc1680 5.06 AW261378
TTAATAAAGGAGAGGGTGGGAACC GGGGCTTATATGTCCCTTGAACTC
umc1646 5.07- 5.08
GCAATTATGAACAGTTGCGTGTGT AGTGGATCGATCGAACATGACTTT
umc1656 6.01- 6.04
AGTTTTGACCGCGCAAAAGTTA GTACGAGCAGGCCATTAACCC
umc1628 6.02- 6.03
GGCTGTAATGCAGGAGATTGAGTT ACTCACGTCACAACTACCGTACCA
umc1653 6.08
GAGACATGGCAGACTCACTGACA GCCGCCCACGTACATCTATC
umc1666 7.02- 7.03
TTATTGCCCTCCCTGTTCTTGTT ACCTTGACGCAGCAATCCTC
umc1660 7.03
GAGCATCGCAGTGGTGGTTAAG AGTAGAGGGTGAGCGACTTGGAC
umc1671 7.05- 7.06
AGCGGAGGAGAGGGAGGTTAT AAGTCCAGGTACCTCAGCTTCG
umc1670 8.05- 8.07
CCTAGGAATAAGATCGCAGGCTTT ATTGTCGACTACAGAGAAGACGCC
umc1665 8.06- 8.07
CAATCAGGAGCCAGGGAGATG CTTAAACTTGTCGAGACGGTCCTG
umc1638 8.08- 8.09
AGGTGACCTCGACGTCCTACG GAGGGGAACAAAGACTTGACGTT
umc1663 8.08- 8.09
GCTTGCACTAGCTTTAGCTCCATC CGGGATCAGTCGTTACAAACATAG
umc1673 8.08- 8.09
AAGCTCAAGCTCCTAGCTCTTCCT GAGGAGCGTCTCCAGAAGGAC
umc1647 9.00
TAAAGCCACAGGCACGAACTTAAT CTTCGCATTTGCACCCAAAC
umc1634 9.02- 9.03
TCCGTTGAGGACACTCGAATTTAT GTAGCCTGCAAAACATCCAAGAAC
umc1636 9.02- 9.03
CATATCAGTCGTTCGTCCAGCTAa GTACTGGTACAGGTCGTCGCTCTT
umc1657 9.03- 9.04
ATGGATGAATATGATCCCACGG GATCCGCACGTAGCTTTTCG
umc1654 9.04- 9.06
CACATTGATCAACTACCAGGTGGA GCCTCTTTTCTTCTCCCATTTTCT
umc1675 9.06- 9.09
GTTCTTCCTCTTCCCCATCAGTCT ATAGCTGCGCGTAAAGCAACC
umc1648 10.03-10.05
CTGCAGTACGTGAGCCTGTACG GCTTGAGCTGTGAGGAAGTTTTG
umc1677 10.03-10.05
TGCAGCAAGTTTGGCTACTGC CTCTTGATGCCGTTGAAGAAGG
umc1678 10.05-10.06
GTAGAGATCGATTCGCTAACCTGC AGTTGTTCCGTTCCGTCCTTATC
umc1640 10.07
ACTACACGGTGTGAGATGTGATCG GTCGTCGCAAGAACAACAAGG
PREVIOUSLY MAPPED MARKERS BUT WITH UPDATED BINS
SSR Updated_Bins GenBank PrimerF
PrimerR
---------- -------------------- --------------------
------------------------------ ------------------------------
umc1177 1.00 AI001344
CGTGTACCGCTCCTCTATAGTCGT AAGTGGCCGAATTCATCCTTTATT
umc1292 1.00 AI948373
GAAGTGGGGAACATGGTTAATGTC TCACGGTTCAGACAGATACAGCTC
umc1269 1.01 AI941989
TATATTAGAGGCACCTCCCTCCGT AGCTGCTTCAGCGACTTTGG
umc1222 1.02 G54891
CTCAGAACAGAAGCCATCAAAAGC CGTCTTCGTGAGAGACATCCTGT
umc1144 1.04 AI629804
ATGGCCCACTCATCATATCTCTGT TGTGTTGATTAGCAGCGGATAAAA
umc1244 1.05 AW011655
AACCTCAGCTAAAACTGCTCGTGT TTGTGCGTGTTTGGAAGTGATAGT
umc1128 1.07 AI677212
TCAATTTTGAGCTATCACTTTCCG ATTGGTTCCATTGGTTTTGTTGAT
umc1278 1.07 AI964577
GTCGGAGGATGATCCCCTATCTAT TGCCATAGTACATGTCCGTCATTC
umc1486 1.07 AI691689
CTTCCAGTTCCAGCCTATTGACAC TTAAGATCTGGCTGGGAAGAAAGC
umc1298 1.09 AI947839
AGCTGAACAAAATAAACGGAACGA AGGACAAGAAAAAGAAGAAGCACG
umc1306 1.09 AI944111
CGAAACAAAACACCCAGCAGTAGT CCAGGATGAATAAATCGTATTGCC
umc1265 2.02 AI977889
GCCTAGTCGCCTACCCTACCAAT TGTGTTCTTGATTGGGTGAGACAT
umc1108 2.06 AI714672
TAAAGAGAGAGGAAACAAGCTGCG ATGATGAAGCCTCACACATACGAA
umc1156 2.06 AI600776
GCTGTGACGTTTGCTACTACTCCA TAGCTATGCCTATGGCCCTGATAA
umc1126 2.08 AI677556
CAACAGGGTGAACCCTCTGTACTT AATATGGTGTTGTGATTTGCATCG
umc1062 3.09 AF033263
GGGATACATGTTCATCATCAGCAG GTGTTGAGCGGATTCGGATACTAC
umc1232 4.00 AW018157
GGAATTACCACAACAAACTAAACTTGG AGGCTCTAGCTACCTGGCTACGTT
umc1276 4.01 AI966861
ACGCAATTATTACTGCCACACGTC CTACCTTGTTCCTAGGGCCGTCTA
umc1288 4.02 AI948003
ATCCGGACAAATTGAACTTTCATC ATAGATTCAGTGTTGGACCGAGGA
umc1299 4.06 AI947817
CTTGGGTTCTTCTCTCCTATGGGT CGCTACAAACAAGTGGCGTTTAAT
umc1329 4.06 AI881613
CCTCTCACATCTCCTCTCCCCT GTGTCGGTGTAGGTCTCCGTCTT
umc1194 4.07 AI668269
ACCACCAGACATGGGAAACTTCT AAGGCGGACACTACTCTACCCTCT
umc1051 4.08 AI372215
CTGATCTGACTAAGGCCATCAAAC AATGATCGAAATGCCATTATTTGT
umc1132 4.08 AI667779
CCAGTCCTCATTACGTTCCGAAT GGAGAGGGACAGAGATAGGGAGAG
umc1574 4.08- 4.09 AJ011615
TTTCATGTGCTTGCAGAGTTTGAC GTCATGCAAGTATCCGCTGTCTT
umc1284 4.09 AI941906
TTCCTCTTTTTAGTAGGGGGTTGG AAGATGATGGTGGAGAGGATGAAG
umc1180 4.10 X57275
GAAGCCCCTTGAAATGAATGAAC CGACGTACGTATAGACTCGCTCAG
umc1240 5.00 AW017539
GCAGCAGGTATTGGAAGTCGTAGT CTGGTCCCTCAGGAAATCCAT
umc1308 5.00 AI943731
GCAGATGGACACAAACAAATGAAG GCTACTGATGCTGGCAATCTTACA
umc1092 5.04 AI396369
TAAGGCGCAGATGAACTAGCCTAC CTCCAGTGAGTTCCAGCGCTAT
umc1098 5.04 G49467
ATAACTCCTGCATCTTGTCAGCAA CACAGGATAGAACCTTCTCAGCAAA
umc1171 5.04 AF050129
ACGTACTACAGATAATGGGCGACG CGCCGTACCCATGAGTATAATGTAA
umc1192 5.04 AI712255
GATCGAACTGCAGAGGAACAAGAG CGCTCCACATCCACATCTACAC
umc1155 5.05 AI600986
TCTTTTATTGTGCCCGTTGAGATT CCTGAGGGTGATTTGTCTGTCTCT
umc1264 5.05 AI977895
AGATAGCTGCACATGGAAACACTT GACACTAGCCTGGAATCAGTTTCA
umc1143 6.00 AI637041
GACACTAGCAATGTTCAAAACCCC CGTGGTGGGATGCTATCCTTT
umc1133 6.01 AI666201
ATTCGATCTAGGGTTTGGGTTCAG GATGCAGTAGCATGCTGGATGTAG
umc1296 6.06 AI947918
CTCTCCCGGCTCTGACCTAGC GCTGGAGATAGGCATCCAGACAC
umc1275 7.03 AI978123
GTTCGCAGGCCTAGACTCTAATGA AGTTCTAGTCCCTGGTGATCCTCC
umc1301 7.03 AI947719
AACAGTCAAGCTCACTTTCCGC CATCCATAAGCTGAAGGAGTGAGG
umc1342 7.04 AI944014
TCTAATCCAATCGACATCGACAGA TCGCCCTCTTTTCTTTTCTTTTCT
umc1407 7.05 AI770831
AGGCTTACCTCCTGAGAAGCAGTT AGGCTTAGCATCGGTGGAGAG
umc1327 8.00 AI881644
AGGGTTTTGCTCTTGGAATCTCTC GAGGAAGGAGGAGGTCGTATCGT
umc1302 8.03 AI947718
ATTTATTCAAACCGACGAAGCAAC TACAAGCGCTACTGCGATGTCTT
umc1343 8.04 AJ238507
CTTCCTGGCACGTAACATTACCAT ATCGGTCTTCCAACCAGATCATTA
umc1121 8.05 AI691589
AAAACGACATGTCATCGTCTTCAA GGGGTCAGGTACAGGGCTAGTAGT
umc1287 8.05 AI979450
ATGGGATGATCAGTCGTTTCAGTC AGAAGGAGGCCCACTACGAGAG
umc1268 8.07 AI973516
ACGAACAACCTAGCACAGTCCTAAA CAAGGCGGTTACCAAGTTTACATC
umc1005 8.08 G42329
TTTGATCACAGACTTATCCCTGTT CTAATGACGAACCCCTAAAAGGT
umc1310 9.06 AI939884
AACTCCGAGATCTACGACAACAGC GAGGAAGAGTTGGCCAGGATG
umc1291 10.01 AI964426
CAAGTCGTGATCATGCGTAGGTAG ACTGCTCCAGGGTGAACTGAAC
umc1318 10.01 AI902041
ACTTCGTCTAGTGTCCCTCCGTT TGCCAGATTAAAAGCAACACAAGA
umc1319 10.01 AI902130
TGAGAGCCACCTTCTTGAGCTACT TTCCTTGAAGGCGAAGGTAGGTAT
umc1312 10.03 AI932183
AAAGTTACTGCTGCCAAAGCTGTC AGATCGAGCGGTGGATATGGT
umc1336 10.03 AI861156
GTACAAATGATAAGCAAGGGGCAG CTCTGTTTTGGAAGAAGCTTTTGG
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