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Regular homology searches

Juergen Pleiss jpleiss at tebio1.biologie.uni-stuttgart.de
Fri Jul 10 08:15:53 EST 1998

Dear colleagues,

We want to regularily search sequence databases for proteins which are homologous to a given target.

Thus, we are searching for a (commercial or academic) tool which allows us to 
- run a BLAST search in the current version of various protein sequence databases (SwissProt, nr,PIR,...) 
- mark all hits which are not yet found previously

So it should 
- compare the results of a BLAST search with a database
- create and change a database of protein sequence entries 

I would be glad if you could point me to such a program.

Thank you for your help,
Juergen Pleiss


Dr.Juergen Pleiss                  
Institute of Technical Biochemistry 
University of Stuttgart          Email:jpleiss at tebio1.biologie.uni-stuttgart.de
Allmandring 31                   Phone:(+49)-711-685-3191
D-70569 Stuttgart, Germany       Fax:  (+49)-711-685-3196
W3 home page:  http://www.itb.uni-stuttgart.de:8080/

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