Try http://www.ibcp.fr/ANTHEPROT/
I find it most useful.
Gustavo Parisi <gustavo at unq.edu.ar> wrote in message
news:374EAFCC.1DB902D9 at unq.edu.ar...
>> I'm looking for a software to obtain an alignment between several
> sequences and a protein structure.
>> Thanks in advance.
>>> Gustavo Parisi
> Universidad Nacional de Quilmes
> Centro de Estudios e Investigaciones
> Roque Saenz Peña 180,
> 1876 Bernal Argentina
>> E-mail: gustavo at unq.edu.ar> Fax:++54 11 4 2757716