Worked like a charm!
Thanks again James.
-John Major
jkb at mrc-lmb.cam.ac.uk wrote:
>> In <3B72C557.7AB05810 at genome.wi.mit.edu> major at genome.wi.mit.edu (major) writes:
>> > Here is the piece of code(which works spledidly with Staden.02_97.beta,
> > except for the filename char limit...)
> >
> [...]
>> > if {$specdir} {
> > extract_readings -io $io -readings $all_reads -quality 1 -directory $dirname
>> Try using -format 2 instead. Formats 0, 1 and 2 correspond to the GUI; normal,
> preassembled, directed assembly.
>> Sorry about the programming documentation being out of date. I'd expect there
> to be heaps of other changes since it was written (1997) too. Unfortunately
> it's hard to find the time, but we really ought to update this stuff. It's
> just such a _tedious_ effort. Maybe I should investigate some auto-generation
> mechanism to extract comments from the source.
>> James
> --
> James Bonfield (jkb at mrc-lmb.cam.ac.uk) Tel: 01223 402499 Fax: 01223 213556
> Medical Research Council - Laboratory of Molecular Biology,
> Hills Road, Cambridge, CB2 2QH, England.
> Also see Staden Package WWW site at http://www.mrc-lmb.cam.ac.uk/pubseq/
