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incomplete model

Balaji Bhyravbhatla balaji at sb.fsu.edu
Tue Dec 7 18:34:44 EST 1999

Dear All,
I have a model which is incomplete at the ends (N and C terminals) 
In CNS I know I can put a break in the MIDDLE of 
a chain and also that the C-terminal needs the OT1/OT2 oxygens which CNS
automatically generates from the pdb file. 

How can I set it up so that the program learns that there are no N and
ends due to an incomplete model and that the total length of the
molecule is
longer than what it has to work with. As it is if I give a BREAK at the
end of the 
chain it still generates OT's and I am wondering if that is what it is 
considering as the terminal?

Dr. Balaji Bhyravbhatla                           
Institute of Molecular Biophysics, FSU                   
Room 412 -- (850) 644 6547                       
balaji at sb.fsu.edu OR bbhyravbhatla at hotmail.com

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