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Welcome to the home page of GeneDoc.

A Full Featured Multiple Sequence Alignment Editor, Analyser and Shading Utility for Windows.

• Data Analysis and Visualization.
• Score assisted manual alignment.
• Paginated Printouts.
• Windows Based.
• Highly Configurable.
• Exported Figures.
• Phylognetic Tree support.

The essentials of GeneDoc.

• GeneDoc's Purpose and Features.
• Supported Platforms.
• GeneDoc's Price, Warranty and Terms of usage.
• OK, OK, Enough already. Download a copy. Updated 02-Mar-1998
• Known Bugs, Work in progress, Latest Test Version: Updated 28-May-1998
• FeedBack, References, Citations and the Author

Something more serious?

These links point to some write-ups meant for MicroBiologists. They serve to describe scientific features of GeneDoc, complete with references.

Why use GeneDoc?

GeneDoc: Analysis and Visualization of Genetic Variation.

GeneDoc's Similarity Groups.

GeneDoc's Percent Identity Plots.

GeneDoc's Superfamily Group features.

GeneDoc's Secondary Structure Features.

The HMS Beagle surfs into port and picks up a copy of GeneDoc.

GeneDoc is chosen as the the Web Pick of the Day at the popular BioMedNet 'webzine,' the HMS Beagle.

GeneDoc puts on 3D shades!

From GeneDoc to RasMol, applying alignment information to 3D graphics is easy and informative.

Check out the GeneDoc tutorial on how to do it!.

ASHI Sequences: the first site to use GeneDoc as an alignment viewer. Complete with instructions on how to configure your browser to have GeneDoc open the alignments directly from the web, alignments take a step forward in user convenience!!

EBI in UK is serving up Clustal created alignments with a Mime type. GeneDoc is listed as one of the viewers at this site.

EMBL's ALI_3D files converted to GeneDoc Format.

This set of files investigate Secondary Structure based alignments of protein SuperFamilies. The original files, created by the Argos Group at EMBL contain a great deal of information. These files were converted to GeneDoc format by the GeneDoc's author to assist in visualization of this data and to provide comprehensive examples of some advanced GeneDoc capabilities.

Look at this! New Chemical Properties mode Example.

A short paper complete with GeneDoc output and a really cool image created at Pittsburgh Supercomputing Center.

Leucine Rich Repeats from Porcine Ribonuclease Inhibitor.

Reciprocal Links.

• DNA Core Facility.
• Research Tools.
• Local Resources for Mol Biology.
• Peter Keller's Hints and Tips.
• Pointers to Molbio Software.
• Russell Malmberg's Biology Software for Alpha NT (ClustalW, GeneDoc and more!)
• Biochemistry Resources
• SINCRIS Software List
• The Mamba Times
• Duke Neurobiology Home Page
• PHYLIP Home Page
• IUBio Archive for Biology data and software
• Micks Software Links
• European Bioinformatics Institute
• Molecular Biology Software
• Software
• The Really Quite Useful Molbio Page
• Crystallography software available via the Web
• BIOINFORMATICS
• Biology at Lake Forest College
• * Genetics Webliography *
• Jeff's Bio-Software Resources
• The BioInformer newsletter (Continuing GeneDoc information)
• Links to interesting places
• Biotechnology Software
• VSMS links directory - Biosoftware
• Biologist's Hotlist
• The Biochemist'ss Toolbox
• Cool Man's Hot Links

Location of PSDB information.

Structural analysis of PDB data at its finest. GeneDoc hopes to be one of the first to support visualization of these very comprehensive secondary structure data files.

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